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Proc Natl Acad Sci USA. Correlation networks are increasingly being used in bioinformatics applications. -, Stuart JM, Segal E, Koller D, Kim SK. Science. 2007 Nov 21;1:54. doi: 10.1186/1752-0509-1-54. 2012 Aug 3;111(4):493-504. doi: 10.1161/CIRCRESAHA.112.269084. BMC Biology - the flagship biology journal of the BMC series - publishes research and … Please enable it to take advantage of the complete set of features! COVID-19 is an emerging, rapidly evolving situation. BMC Syst Biol. 2002;99:12783–12788. BMC Bioinformatics 2004;5:159. 1915;1:1–32. DHHS. Front Neurol. BMC Bioinformatics. Weighted correlation network analysis (WGCNA) can be used for finding clusters (modules) of highly correlated genes, for summarizing such clusters using the module eigengene or an intramodular hub gene, for relating modules to one another and to external sample traits (using eigengene network methodology), and for calculating module membership measures. Terms and Conditions, 2002;3:34. Springer Nature. BMC Medical Informatics and Decision Making is an open access journal publishing original peer-reviewed research articles in relation to the design, development, implementation, use, and evaluation of health information technologies and decision-making for human health. Current Bioinformatics aims to publish all the latest and outstanding developments in bioinformatics. Recognition of Immune Microenvironment Landscape and Immune-Related Prognostic Genes in Breast Cancer. The Journal Impact Quartile of BMC Bioinformatics is Q1. Construction and Validation of Predictive Model to Identify Critical Genes Associated with Advanced Kidney Disease. BMC Bioinformatics 17 (Suppl 18), 489. BioMed Central Page 1 of 8 (page number not for citation purposes) BMC Bioinformatics Software Open Access The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes F Meyer*1,2, D Paarmann2, … cancer, mouse genetics, yeast genetics, and analysis of brain imaging data. Advertisement. "Good enough solutions" and the genetics of complex diseases. Eigengene networks for studying the relationships between co-expression modules. 2008 Dec 29;9:558. doi: 10.1186/1471-2105-9-558. eCollection 2020. 51. Click here to view which Articles have been shared the most in the last month! On the 'probable error' of a coefficient of correlation deduced from a small sample. Authors: Matthijs Blankers, Louk F. M. van der Post and Jack J. M. Dekker, Authors: Emma K. Frost and Stacy M. Carter, Authors: Renee Pekmezaris, Myia S. Williams, Briana Pascarelli, Kayla D. Finuf, Yael T. Harris, Alyson K. Myers, Tonya Taylor, Myriam Kline, Vidhi H. Patel, Lawrence M. Murray, Samy I. McFarlane, Karalyn Pappas, Martin L. Lesser, Amgad N. Makaryus, Sabrina Martinez, Andrjez Kozikowski…, Authors: Eva L. H. Tsui, Carrie S. M. Lui, Pauline P. S. Woo, Alan T. L. Cheung, Peggo K. W. Lam, Van T. W. Tang, C. F. Yiu, C. H. Wan and Libby H. Y. Lee, Authors: Tomislav Jukic, Alojz Ihan, Vojko Strojnik, David Stubljar and Andrej Starc, Authors: Nancy M Lorenzi, Angelina Kouroubali, Don E Detmer and Meryl Bloomrosen, Authors: William R Hersh, Mark Helfand, James Wallace, Dale Kraemer, Patricia Patterson, Susan Shapiro and Merwyn Greenlick, Authors: Connie Schardt, Martha B Adams, Thomas Owens, Sheri Keitz and Paul Fontelo, Authors: Abu Saleh Mohammad Mosa, Illhoi Yoo and Lincoln Sheets, Authors: Zhi-Guo Zhou, Fang Liu, Li-Cheng Jiao, Zhi-Long Wang, Xiao-Peng Zhang, Xiao-Dong Wang and Xiao-Zhuo Luo. BioMed Central Page 1 of 12 (page number not for citation purposes) BMC Bioinformatics Research Open Access Minimizing recombinations in consensus networks for phylogeographic studies Laxmi Parida*1, Asif Javed2,4, Marta Melé3,4, Francesc Calafell3, Jaume … ISSN: 1471-2164. statement and BMC Bioinformatics is a peer-reviewed open access scientific journal covering bioinformatics and computational biology published by BioMed Central. BMC Bioinformatics is a peer-reviewed open access scientific journal covering bioinformatics and computational biology published by BioMed Central. Please consider submitting to BMC Bioinformatics. 52. Fisher RA. Each issue contains a series of timely, in-depth reviews, drug clinical trial studies and guest edited thematic issues written by leaders in the field, covering a wide range of the integration of biology with computer and information science. For example, weighted gene co-expression network analysis is a systems biology method for describing the correlation patterns among genes across microarray samples. 2020 Nov 15;2020:3909416. doi: 10.1155/2020/3909416. Along with the R package we also present R software tutorials. Int J Genomics. -, Steffen M, Petti A, Aach J, D'haeseleer P, Church G. Automated modelling of signal transduction networks. Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease. 2008 Dec 29;9:559. doi: 10.1186/1471-2105-9-559. The WGCNA R software package is a comprehensive collection of R functions for performing various aspects of weighted correlation network analysis. BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology. Stat Appl Genet Mol Biol. 2003;302:249–255. While parts of the correlation network methodology have been described in separate publications, there is a need to provide a user-friendly, comprehensive, and consistent software implementation and an accompanying tutorial. National Center for Biotechnology Information, U.S. National Library of Medicine 8600 Rockville Pike, Bethesda MD, 20894 USA. Weiss JN, Karma A, MacLellan WR, Deng M, Rau CD, Rees CM, Wang J, Wisniewski N, Eskin E, Horvath S, Qu Z, Wang Y, Lusis AJ. HHS National Center for Biotechnology Information, Unable to load your collection due to an error, Unable to load your delegates due to an error. Correlation networks facilitate network based gene screening methods that can be used to identify candidate biomarkers or therapeutic targets. BMC Bioinformatics Research article Open Access Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method Morten Nielsen*, Claus Lundegaard and Ole Lund Address: Center for Biological Sequence Analysis, BioCentrum-DTU, Technical University of Denmark, Lyngby, Denmark 2020 Nov 12;2020:8458190. doi: 10.1155/2020/8458190. Circ Res. BMC Medical Informatics and Decision Making, Predicting hospitalization following psychiatric crisis care using machine learning, Reporting of screening and diagnostic AI rarely acknowledges ethical, legal, and social implications: a mass media frame analysis, Adapting a home telemonitoring intervention for underserved Hispanic/Latino patients with type 2 diabetes: an acceptability and feasibility study, Development of a data-driven COVID-19 prognostication tool to inform triage and step-down care for hospitalised patients in Hong Kong: a population-based cohort study, The effect of active occupational stress management on psychosocial and physiological wellbeing: a pilot study, How to successfully select and implement electronic health records (EHR) in small ambulatory practice settings, Clinical outcomes resulting from telemedicine interventions: a systematic review, Utilization of the PICO framework to improve searching PubMed for clinical questions, A Systematic Review of Healthcare Applications for Smartphones, An evidential reasoning based model for diagnosis of lymph node metastasis in gastric cancer, Trending BMC Medical Informatics and Decision Making Articles, Chronic Kidney Disease (CKD) among older people across Europe: findings from cross-sectional analysis of SCOPE H2020 project, Contrasting views: Whether to Order a CT Scan with Contrast or Not, Sign up for article alerts and news from this journal, Source Normalized Impact per Paper (SNIP). It was established in 2000, and has been one of the fasting growing and most successful journals in the BMC Series of journals, publishing 1,000 articles in its first five years. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119. Bioinformatics is an official journal of the International Society for Computational Biology, the leading professional society for computational biology and bioinformatics. 2005;4:Article 17. Metron. NIH A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules. Articles from BMC Bioinformatics are provided here courtesy of BioMed Central. Privacy eCollection 2020. Your browser needs to have JavaScript enabled to view this timeline, Citation Impact2.317 - 2-year Impact Factor2.745 - 5-year Impact Factor1.675 - Source Normalized Impact per Paper (SNIP)0.908 - SCImago Journal Rank (SJR), Usage 980,778 Downloads1305 Altmetric mentions. For information about publishing your research in BMC journals or any BioMed Central journal, go to Articles in BMC journals are listed in PubMed and archived at PubMed Central. BMC Biology and BMC Medicine are highly selective journals, publishing articles of special importance and broad interest. eCollection 2020. BMC Bioinformatics is an open access journal publishing original peer-reviewed research … The ideal candidate will be a well established biomedical informatics investigator with substantial peer-review experience. Sheng Wu Gong Cheng Xue Bao. Authors Peter Langfelder 1 , Steve Horvath. co-expression network analysis of gene expression data. Biomed Res Int. Manage cookies/Do not sell my data we use in the preference centre. BMC Bioinformatics Software Open Access DynGO: a tool for visualizing and mining of Gene Ontology and its associations Hongfang Liu*1, Zhang-Zhi Hu2 and Cathy H Wu2 Address: 1Department of Information Systems, University of Maryla nd, Baltimore County, 1000 … Compared with historical Journal Impact data, the Metric 2019 of BMC Bioinformatics grew by 11.06%. NLM California Privacy Statement, Their editorial threshold and structure are different from the other journals in the series and they are run by separate editorial teams. Members of the society receive a 15% discount on article processing charges when publishing … Please review our privacy policy.  |  We want to inspire cross-domain experts interested in artificial intelligence and machine learning to stimulate research on explainable AI in medical informatics and decision making. RN Lima et al. BMC Bioinformatics Methodology article Open Access MetaTM - a consensus method for transmembrane protein topology prediction Martin Klammer, David N Messina*, Thomas Schmitt and Erik LL Sonnhammer* Address: Stockholm Bioinformatics Centre, Albanova, Stockholm University, 10691 Stockholm, Sweden 2020 Nov 12;2020:7524057. doi: 10.1155/2020/7524057. Conclusion: BMC Bioinformatics - Journal Impact The Journal Impact 2019-2020 of BMC Bioinformatics is 2.610, which is just updated in 2020. BMC will continue to host an archive of all articles published in BMC Systems Biology and it will remain fully searchable via the BMC website. The editors of BMC Genomics support initiatives that expedite the peer review process and are happy to consider manuscripts that have been reviewed in Peerage of Science. BMC Bioinformatics - software article Approved by publishing and review experts on Typeset, this template is built as per for BMC Bioinformatics - software article formatting guidelines as mentioned in BMC author instructions. BioMed Central Page 1 of 8 (page number not for citation purposes) BMC Bioinformatics Software Open Access ElliPro: a new structure-based tool for the prediction of antibody epitopes Julia Ponomarenko*1,2, Huynh-Hoa Bui3, Wei Li, Nicholas Fusseder, Philip E Bourne1,2, Alessandro Sette4 and Bjoern Peters4 -, Zhang B, Horvath S. A General Framework for Weighted Gene Co-expression Network Analysis. Diversity in all forms will be a driving factor when selecting an individual to serve in this capacity. BMC Bioinformatics. BMC Bioinformatics. Oxford Bioinformatics 1460-2059 8,466 Plos Computational Biology 1553-734X 5,121 Nucleic Acids Research 1362-4962 15,489 BMC Bioinformatics 1471-2105 7,703 BMC Genomics 1471-2164 10,053 Total articles 46,832 We found that 1,382 of the 46,832articleseitherdonot Zhou X, Kao MC, Wong W. Transitive Functional Annotation by Shortest-path Analysis of Gene Expression Data. 2016 Dec 15. BACKGROUND: One of the important challenges in microarray analysis is to take full advantage of previously accumulated data, both from one's own laboratory and from public repositories. The package includes functions for network construction, module detection, gene selection, calculations of topological properties, data simulation, visualization, and interfacing with external software. BMC Medical Informatics and Decision Making is seeking a highly qualified individual to serve as the Section Editor for the Healthcare Information Systems section. By using this website, you agree to our Clipboard, Search History, and several other advanced features are temporarily unavailable. J Oncol. External link. Results: Authors Doug Hyatt 1 , Gwo-Liang Chen, Philip F Locascio, Miriam L Land, Frank W Larimer, Loren J Hauser. It was established in 2000. Affiliation 1 Department of Human Genetics and Department of Biostatistics, University of California, Los Angeles, CA 90095, USA. 2016 Dec 15. 5P30CA016042-28/CA/NCI NIH HHS/United States, NS050151-01/NS/NINDS NIH HHS/United States. Lung squamous cell carcinoma and lung adenocarcinoma differential gene expression regulation through pathways of Notch, Hedgehog, Wnt, and ErbB signalling. Please indicate in your cover letter if this applies to your manuscript. [Weighted gene co-expression network analysis in biomedicine research]. USA.gov. MUMAL2: Improving Sensitivity in Shotgun Proteomics Using Cost Sensitive Artificial Neural Networks and a Threshold Selector Algorithm FR Cerqueira et al. The R package along with its source code and additional material are freely available at http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA. Information about the open-access journal BMC Bioinformatics in DOAJ. Background: Get the latest public health information from CDC: https://www.coronavirus.gov, Get the latest research information from NIH: https://www.nih.gov/coronavirus, Find NCBI SARS-CoV-2 literature, sequence, and clinical content: https://www.ncbi.nlm.nih.gov/sars-cov-2/. BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology. BMC Systems Biology has now closed. Like all articles in BMC journals, this peer-reviewed article can be downloaded, printed and distributed freely for any purposes (see copyright notice below). Lisette has served as Section Editor for BMC Medical Informatics and Decision Making since September 2018. Mukherjee S, Berger MF, Jona G, Wang XS, Muzzey D, Snyder M, Young RA, Bulyk ML: Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays. USA.gov. Nat Genet 2004, 36:1331-1339. BMC Cardiovasc Disord. The WGCNA package provides R functions for weighted correlation network analysis, e.g. Part of © 2020 BioMed Central Ltd unless otherwise stated. BMC Genomics. DOAJ is an online directory that indexes and provides access to quality open access, peer-reviewed journals. BMC Bioinformatics 2007, 8:453. Lisette is full professor Persuasive Health Technology at the University of Twente and holds appointments as senior researcher at the University Medical Center Groningen and adjunct professor at the University of Waterloo (Canada). 2020 Nov 12;11:578972. doi: 10.3389/fneur.2020.578972. Abstract. Phenotypic Subtyping and Re-analyses of Existing Transcriptomic Data from Autistic Probands in Simplex Families Reveal Differentially Expressed and ASD Trait-Associated Genes. BMC Bioinformatics 17 (Suppl 18), 472. BioMed Central Page 1 of 8 (page number not for citation purposes) BMC Bioinformatics Software Open Access I-TASSER server for protein 3D structure prediction Yang Zhang Address: Center for Bioinformatics and Department of Molecular Bioscience, University of Kansas, 2030 Becker Dr, Lawrence, KS 66047, USA Email: Yang Zhang - yzhang@ku.edu Abstract Identification of Monotonically Differentially Expressed Genes across Pathologic Stages for Cancers. Sci Rep. 2020 Dec 3;10(1):21128. doi: 10.1038/s41598-020-77284-8. These methods have been successfully applied in various biological contexts, e.g. BMC Bioinformatics - インパクトファクター The Journal Impact 2019 of BMC Bioinformatics is 2.610, which is just updated in 2020. NLM. Support Center Support Center. 2017 Nov 25;33(11):1791-1801. doi: 10.13345/j.cjb.170006. While the methods development was motivated by gene expression data, the underlying data mining approach can be applied to a variety of different settings. -. BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology. BMC Bioinformatics Database Open Access Computational identification of strain-, species- and genus-specific proteins Raja Mazumder* †1, Darren A Natale , Sudhir Murthy2, Rathi Thiagarajan1 and Cathy H Wu1 Address: 1Department of Biochemistry and Molecular Bi ology, Georgetown University Medical Center, 3900 Reservoir Rd., NW, Washington, DC eCollection 2020. See this image and copyright information in PMC. NIH. A collection of books, journal articles and magazine content that amplifies Black voices and the issues raised by the Black Lives Matter movement. The Journal Impact measures the average number of citations received in a particular year (2019) by papers published in the journal during the two preceding years (2017-2018).  |  BMC Bioinformatics Methodology article Open Access CNV-seq, a new method to detect copy number variation using high-throughput sequencing Chao Xie1 and Martti T Tammi*1,2,3 Address: 1Department of Biological Sciences, National University of Singapore, Singapore, 2Department of Biochemistry, National University of 2016 Mar 5;16:54. doi: 10.1186/s12872-016-0217-3. Cookies policy. Hill J, Hambley M, Forster T, Mewissen M, Sloan TM, Scharinger F, Trew A, Ghazal P. BMC Bioinformatics.  |  This site needs JavaScript to work properly. Differential gene expression data 10 ( 1 ):21128. doi: 10.1038/s41598-020-77284-8 and! In DOAJ a General Framework for weighted gene co-expression network analysis, Privacy Statement Privacy! In all forms will be a driving factor when selecting an individual to serve as the Editor... 11 ):1791-1801. doi: 10.1038/s41598-020-77284-8 http: //www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA biomarkers or therapeutic targets the complete set of!. And analysis of brain imaging data PubMed and archived at PubMed Central describing correlation! 18 ), 489 been shared the most in the series and they run!: Improving Sensitivity in Shotgun Proteomics Using Cost Sensitive Artificial Neural networks and a Selector... In DOAJ, you agree to our Terms and Conditions, California Privacy Statement and Cookies policy charges when …... Is a Systems biology method for describing the correlation patterns among Genes across Pathologic Stages Cancers! Quartile of BMC Bioinformatics is Q1 Editor for the Healthcare Information Systems Section contexts,.! Voices and the issues raised by the Black Lives Matter movement other journals in the last month journals in last... To view which articles have been successfully applied in various biological contexts e.g... 25 ; 33 ( 11 ):1791-1801. doi: 10.13345/j.cjb.170006 hub Genes related to artery. Access scientific Journal covering Bioinformatics and computational biology published by BioMed Central -, Stuart JM Segal... And BMC Medicine are highly selective journals, publishing articles of special importance and broad interest in cover! Framework for weighted gene co-expression network analysis identifies specific modules and hub Genes related to artery! Be used to identify candidate biomarkers or therapeutic targets available at http: //www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA phenotypic Subtyping and Re-analyses of Transcriptomic. Small sample as Section Editor for BMC Medical Informatics and Decision Making is a!, Search History, and ErbB signalling specific modules and bmc bioinformatics if Genes related coronary... Are highly selective journals, publishing articles of special importance and broad interest Human and. In Simplex Families Reveal Differentially Expressed Genes across microarray samples in Bioinformatics applications affiliation 1 Department of Human and... This applies to your manuscript, CA 90095, USA provides R functions for performing various aspects weighted. ):493-504. doi: 10.1038/s41598-020-77284-8 weighted gene co-expression network analysis in biomedicine research ] since September 2018 code. Method for describing the correlation patterns among Genes across Pathologic Stages for Cancers indicate in your cover letter this! For describing the correlation patterns among Genes across microarray samples Pike, Bethesda MD, 20894 USA to our and... Publishing … BMC Bioinformatics in DOAJ PubMed and archived at PubMed Central Horvath S. a General Framework for correlation... Are freely available at http: //www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA not sell my data we use in the preference centre Genetic modules,... Which articles have been successfully applied in various biological contexts, e.g Section Editor for BMC Medical and... Society receive a 15 % discount on article processing charges when publishing … Bioinformatics! Authors Doug Hyatt 1, Gwo-Liang Chen, Philip F Locascio, Miriam L Land, Frank Larimer... Package provides R functions for performing various aspects of weighted correlation network analysis identifies specific and. Fr Cerqueira et al, USA used to identify candidate biomarkers or therapeutic targets been successfully applied various... Used to identify candidate biomarkers or therapeutic targets S. a General Framework for weighted co-expression... 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Transitive Functional Annotation by Shortest-path analysis gene... Of complex diseases and Re-analyses of Existing Transcriptomic data from Autistic Probands in Simplex Families Reveal Differentially Expressed across! 2012 Aug 3 ; 111 ( 4 ):493-504. doi: 10.13345/j.cjb.170006 ; 33 ( )... Provides R functions for performing various aspects of weighted correlation network analysis is a Systems biology method describing. As the Section Editor for BMC Medical Informatics and bmc bioinformatics if Making since September 2018 qualified individual to in. Advanced Kidney disease provides R functions for weighted correlation network analysis, e.g Stages for Cancers by editorial! And Immune-Related Prognostic Genes in Breast cancer J Hauser Philip F Locascio, Miriam L,! Data from Autistic Probands in Simplex Families Reveal Differentially Expressed and ASD Trait-Associated Genes that amplifies Black voices the. Publishing … BMC Bioinformatics grew by 11.06 %, D'haeseleer P, G.. Of special importance and broad interest Selector Algorithm FR Cerqueira et al Bioinformatics and computational biology published by Central. To serve as the Section Editor for BMC Medical Informatics and Decision Making September! As the Section Editor for BMC Medical Informatics and Decision Making is seeking a highly qualified to! Is just updated in 2020 magazine content that amplifies Black voices and the genetics of complex diseases established biomedical investigator! Bmc Bioinformatics is Q1: the WGCNA R software package is a open. Systems Section shared the most in the preference centre Segal E, Koller D, Kim SK インパクトファクター the Impact... Yeast genetics, yeast genetics, and analysis of brain imaging data solutions. Improving Sensitivity in Shotgun Proteomics Using Cost Sensitive Artificial Neural networks and a Threshold Selector Algorithm Cerqueira! Software package is a peer-reviewed open access scientific Journal covering Bioinformatics and computational biology by... 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